| FinemappingConvergence {susieR} | R Documentation |
Simulated Fine-mapping Data with Convergence Problem.
Description
Data simulated using real genotypes from 50,000 individuals and 200 SNPs. Two of the SNPs have non-zero effects on the multivariate response. The response data are generated under a linear regression model. The simulated response and the columns of the genotype matrix are centered.
Format
FinemappingConvergence is a list with the following
elements:
- XtX
Summary statistics computed using the centered and scaled genotype matrix.
- Xty
Summary statistics computed using the centered and scaled genotype data, and the centered simulated response.
- yty
yty is computed using the centered simulated response.
- n
The sample size (50,000).
- true_coef
The coefficients used to simulate the responses.
- z
z-scores from a simple (single-SNP) linear regression.
See Also
A similar data set with more SNPs is used in the “Refine SuSiE model” vignette.
Examples
data(FinemappingConvergence)