superimpose {spatstat.geom} | R Documentation |
Superimpose Several Geometric Patterns
Description
Superimpose any number of point patterns or line segment patterns.
Usage
superimpose(...)
## S3 method for class 'ppp'
superimpose(..., W=NULL, check=TRUE)
## S3 method for class 'psp'
superimpose(..., W=NULL, check=TRUE)
## S3 method for class 'splitppp'
superimpose(..., W=NULL, check=TRUE)
## S3 method for class 'ppplist'
superimpose(..., W=NULL, check=TRUE)
## Default S3 method:
superimpose(...)
Arguments
... |
Any number of arguments, each of which represents either a point pattern or a line segment pattern or a list of point patterns. |
W |
Optional. Data determining the window for the resulting pattern.
Either a window (object of class |
check |
Logical value (passed to |
Details
This function is used to superimpose several geometric patterns of the same kind, producing a single pattern of the same kind.
The function superimpose
is generic, with methods
for the class ppp
of point patterns, the class psp
of line segment patterns, and a default method. There is also
a method for lpp
, described separately in
superimpose.lpp
.
The dispatch to a method is initially determined
by the class of the first argument in ...
.
-
default
: If the first argument is not an object of classppp
orpsp
, then the default methodsuperimpose.default
is executed. This checks the class of all arguments, and dispatches to the appropriate method. Arguments of classppplist
can be handled. -
ppp
: If the first...
argument is an object of classppp
then the methodsuperimpose.ppp
is executed. All arguments in...
must be eitherppp
objects or lists with componentsx
andy
. The result will be an object of classppp
. psp: If the first
...
argument is an object of classpsp
then thepsp
method is dispatched and all...
arguments must bepsp
objects. The result is apsp
object.
The patterns are not required to have the same window of observation.
The window for the superimposed pattern is controlled
by the argument W
.
-
If
W
is a window (object of class"W"
or something acceptable toas.owin
) then this determines the window for the superimposed pattern. -
If
W
isNULL
, or the character string"none"
, then windows are extracted from the geometric patterns, as follows. Forsuperimpose.psp
, all arguments...
are line segment patterns (objects of class"psp"
); their observation windows are extracted; the union of these windows is computed; and this union is taken to be the window for the superimposed pattern. Forsuperimpose.ppp
andsuperimpose.default
, the arguments...
are inspected, and any arguments which are point patterns (objects of class"ppp"
) are selected; their observation windows are extracted, and the union of these windows is taken to be the window for the superimposed point pattern. Forsuperimpose.default
if none of the arguments is of class"ppp"
then no window is computed and the result ofsuperimpose
is alist(x,y)
. -
If
W
is one of the strings"convex"
,"rectangle"
or"bbox"
then a window for the superimposed pattern is computed from the coordinates of the points or the line segments as follows."bbox"
:the bounding box of the points or line segments (see
bounding.box.xy
);"convex"
:the Ripley-Rasson estimator of a convex window (see
ripras
);"rectangle"
:the Ripley-Rasson estimator of a rectangular window (using
ripras
with argumentshape="rectangle"
).
-
If
W
is a function, then this function is used to compute a window for the superimposed pattern from the coordinates of the points or the line segments. The function should accept input of the formlist(x,y)
and is expected to return an object of class"owin"
. Examples of such functions areripras
andbounding.box.xy
.
The arguments ...
may be marked patterns.
The marks of each component pattern must have the same format.
Numeric and character marks may be “mixed”. If there is such
mixing then the numeric marks are coerced to character in the
combining process. If the mark structures are all data frames,
then these data frames must have the same number of columns and
identical column names.
If the arguments ...
are given in the form name=value
,
then the name
s will be used as an extra column of marks
attached to the elements of the corresponding patterns.
Value
For superimpose.ppp
, a point pattern (object of class "ppp"
).
For superimpose.default
, either a point pattern
(object of class "ppp"
) or a list(x,y)
.
For superimpose.psp
, a line segment pattern (object of class
"psp"
).
Author(s)
Adrian Baddeley Adrian.Baddeley@curtin.edu.au and Rolf Turner rolfturner@posteo.net.
See Also
Examples
# superimposing point patterns
p1 <- runifrect(30)
p2 <- runifrect(42)
s1 <- superimpose(p1,p2) # Unmarked pattern.
p3 <- list(x=rnorm(20),y=rnorm(20))
s2 <- superimpose(p3,p2,p1) # Default method gets called.
s2a <- superimpose(p1,p2,p3) # Same as s2 except for order of points.
s3 <- superimpose(clyde=p1,irving=p2) # Marked pattern; marks a factor
# with levels "clyde" and "irving";
# warning given.
marks(p1) <- factor(sample(LETTERS[1:3],30,TRUE))
marks(p2) <- factor(sample(LETTERS[1:3],42,TRUE))
s5 <- superimpose(clyde=p1,irving=p2) # Marked pattern with extra column
marks(p2) <- data.frame(a=marks(p2),b=runif(42))
s6 <- try(superimpose(p1,p2)) # Gives an error.
marks(p1) <- data.frame(a=marks(p1),b=1:30)
s7 <- superimpose(p1,p2) # O.K.
# how to make a 2-type point pattern with types "a" and "b"
u <- superimpose(a = runifrect(10), b = runifrect(20))
# how to make a 2-type point pattern with types 1 and 2
u <- superimpose("1" = runifrect(10), "2" = runifrect(20))
# superimposing line segment patterns
X <- as.psp(matrix(runif(20), 5, 4), window=owin())
Y <- as.psp(matrix(runif(40), 10, 4), window=owin())
Z <- superimpose(X, Y)
# being unreasonable
## Not run:
if(FALSE) {
crud <- try(superimpose(p1,p2,X,Y)) # Gives an error, of course!
}
## End(Not run)