A1 {sonicLength}

HTLV-1 Fragment Length Data

Description

A sample from a patient with HTLV-1 was analyzed as described in Gillet et al (2001).

Usage

data(A1)

Format

A data frame with 6176 observations on the following 3 variables.

locations

a factor with levels 01 F 101480450 ... X R 99972891 indicating the genomic sites at which insertions were detected

lengths

a numeric vector of fragment lengths

replicates

a numeric vector giving replicate IDs

Details

For each replicate, the unique combinations of the genome location at which an insertion site was detected and the length(s) of the fragment(s) sequenced were noted. There is one such row in he data.frame for each such combination.

Source

See Gillet et al 2011 for more details.

References

Gillet, N.A., Malani, N., Melamed, A., Gormley, N., Carter, R., Bentley, D., Berry, C., Bushman, F.D., Taylor, G.P., and Bangham, C.R. (2011). The host genomic environment of the provirus determines the abundance of HTLV-1-infected T-cell clones. Blood 117, 3113-3122.

Examples

data(A1)
str(A1)