permutationScoreModel {sigr} | R Documentation |
Empirical permutation test of significance of scoreFn(modelValues,yValues) >= scoreFn(modelValues,perm(yValues)).
Description
Treat permutation re-samples as similar to bootstrap replications.
Usage
permutationScoreModel(
modelValues,
yValues,
scoreFn,
...,
na.rm = FALSE,
returnScores = FALSE,
nRep = 100,
parallelCluster = NULL
)
Arguments
modelValues |
numeric array of predictions. |
yValues |
numeric/logical array of outcomes, dependent, or truth values |
scoreFn |
function with signature scoreFn(modelValues,yValues) returning scalar numeric score. |
... |
not used, forces later arguments to be bound by name |
na.rm |
logical, if TRUE remove NA values |
returnScores |
logical if TRUE return detailed permutedScores |
nRep |
integer number of repititions to perform |
parallelCluster |
optional snow-style parallel cluster. |
Value
summaries
Examples
set.seed(25325)
y <- 1:5
m <- c(1,1,2,2,2)
cor.test(m,y,alternative='greater')
f <- function(modelValues,yValues) cor(modelValues,yValues)
permutationScoreModel(m,y,f)
[Package sigr version 1.1.5 Index]