plot.timeseries {segmenTier}

Plot method for the "timeseries" object.

Description

plot the processed time-series object returned from processTimeseries.

Usage

## S3 method for class 'timeseries'
plot(x, plot = c("total", "timeseries"), xaxis,
  ylabh = TRUE, ...)

Arguments

x

a time-series object as returned by processTimeseries

plot

a string vector indicating the values to be plotted; "total": plot of the total signal, summed over the time-points, and indicating the applied threshold low.thresh; note that the total levels may have been transformed (e.g. by log_1 or ash) depending on the arguments trafo and dc.trafo in processTimeseries; "timeseries": plot the complete time-series as a heatmap, where time is plotted bottom-up on the y-axis and segmentation coordinates on the x-axis;

xaxis

x-values to use as x-axis (e.g. to reflect absolute chromosomal coordinates)

ylabh

plot y-axis title horizontally

...

additional arguments to plot of total signal