id_paramPos {secsse} | R Documentation |
Parameter structure setting
Sets the parameters (speciation, extinction and transition) ids. Needed for
ML calculation (secsse_ml()
).
Description
Parameter structure setting
Sets the parameters (speciation, extinction and transition) ids. Needed for
ML calculation (secsse_ml()
).
Usage
id_paramPos(traits, num_concealed_states)
Arguments
traits |
vector with trait states for each tip in the phylogeny. The
order of the states must be the same as the tree tips. For help, see
|
num_concealed_states |
number of concealed states, generally equivalent to the number of examined states in the dataset. |
Value
A list that includes the ids of the parameters for ML analysis.
Examples
traits <- sample(c(0,1,2), 45,replace = TRUE) #get some traits
num_concealed_states <- 3
param_posit <- id_paramPos(traits,num_concealed_states)
[Package secsse version 3.1.0 Index]