check_dv_ae_aedecod_covid {sdtmchecks} | R Documentation |
Check for consistency between DV and AE for COVID-19 events
Description
If a patient has a DV record indicating COVID-19 then they should also have COVID-related AE where AE.AEDECOD matches covid.REFTERM.
Usage
check_dv_ae_aedecod_covid(
AE,
DV,
covid_terms = c("COVID-19", "CORONAVIRUS POSITIVE")
)
Arguments
AE |
Adverse Events SDTM dataset with variables USUBJID, AEDECOD |
DV |
Protocol Deviation SDTM dataset with variables USUBJID, DVREAS |
covid_terms |
A length >=1 vector of AE terms identifying COVID-19 (case does not matter) |
Value
boolean value if check returns 0 obs, otherwise return subset dataframe.
Author(s)
Natalie Springfield
See Also
Other COVID:
check_ae_aeacn_ds_disctx_covid()
,
check_ae_aeacnoth_ds_stddisc_covid()
,
check_dv_covid()
Examples
AE <- data.frame(
USUBJID = 1:6,
AEDECOD = c("pandemic", "covid-19","some AE","some AE","CORONAVIRUS POSITIVE","UNMAPPED")
)
DV <- data.frame(
USUBJID = 1:6,
DVREAS=c("SUSPECTED EPIDEMIC/PANDEMIC INFECTION",
"UNKNOWN",
"SUSPECTED EPIDEMIC/PANDEMIC INFECTION",
"OTHER",
"SUSPECTED EPIDEMIC/PANDEMIC INFECTION",
"SUSPECTED EPIDEMIC/PANDEMIC INFECTION")
)
check_dv_ae_aedecod_covid(AE,DV)
# Pass specific covid terms
check_dv_ae_aedecod_covid(AE,DV,covid_terms=c("COVID-19", "CORONAVIRUS POSITIVE","PANDEMIC"))
[Package sdtmchecks version 1.0.0 Index]