check_ae_aedthdtc_aesdth {sdtmchecks} | R Documentation |
Check AEs with AEDTHDTC value but AESDTH not "Y"
Description
This check looks for AE entries with an AEDTHDTC (death date) value and AESDTH not equal to "Y"
Usage
check_ae_aedthdtc_aesdth(AE, preproc = identity, ...)
Arguments
AE |
Adverse Event SDTM dataset with variables USUBJID, AEDTHDTC, AESDTH, AEDECOD, AETERM, and AESTDTC |
preproc |
An optional company specific preprocessing script |
... |
Other arguments passed to methods |
Value
Boolean value for whether the check passed or failed, with 'msg' attribute if the check failed
Author(s)
Shumei Chi
Examples
AE <- data.frame(
USUBJID = c(1:7),
AEDECOD = c(letters[1:5], "", NA),
AETERM = letters[1:7],
AESDTH = "Y",
AEDTHDTC = "2020-01-02",
AESTDTC = c(1:7),
AESPID = "FORMNAME-R:5/L:5XXXX",
stringsAsFactors=FALSE)
# expect pass
check_ae_aedthdtc_aesdth(AE)
check_ae_aedthdtc_aesdth(AE,preproc=roche_derive_rave_row)
# expect fail
AE1 <- AE
AE1$AESDTH[3] <- "N"
check_ae_aedthdtc_aesdth(AE1)
check_ae_aedthdtc_aesdth(AE1,preproc=roche_derive_rave_row)
# expect fail with AESDTH = NA
AE2 <- AE
AE2$AESDTH[4] <- NA
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)
# non-required variable missing
AE2$AESPID <- NULL
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)
# required variable missing
AE2$AESDTH <- NULL
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)
[Package sdtmchecks version 1.0.0 Index]