| phyper_test {sccca} | R Documentation |
Performs phyper test to get the significant overlap between genes for cell type assignment
Description
This Function is used to perform phyper test to get cell types
Usage
phyper_test(ref, overlap)
Arguments
ref |
reference gene set. |
overlap |
genes that pass the correlation threshold. |
Value
vector of p-value and overlap.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
Examples
phyper_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))
[Package sccca version 0.1.1 Index]