fisher_test {sccca}

Performs fisher exact test to get the significant overlap between genes for cell type assignment

Description

This Function is used to perform fisher exact test to get cell types

Usage

fisher_test(ref, gene_overlap)

Arguments

ref

reference gene set.

gene_overlap

genes that pass the correlation threshold.

Value

vector of p-value and overlap.

Author(s)

Mohmed Soudy [e-mail] and Sohpie LE BARS [e-mail] and Enrico Glaab [e-mail]

Examples

fisher_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))