plotCellTypeCorrHeatmap {scGOclust}

plot clustered heatmap for cell type corr

Description

plot clustered heatmap for cell type corr

Usage

plotCellTypeCorrHeatmap(corr_matrix, scale = NA, ...)

Arguments

corr_matrix

correlation matrix from cellTypeGOCorr or crossSpeciesCellTypeGOCorr

scale

scale value by column, row, or default no scaling (NA)

...

params to pass to slanter::sheatmap

Value

a sheatmap heatmap

Examples

library(scGOclust)
library(httr)
httr::set_config(httr::config(ssl_verifypeer = FALSE))
data(mmu_tbl)
data(mmu_subset)

go_seurat_obj = makeGOSeurat(ensembl_to_GO = mmu_tbl,
 seurat_obj = mmu_subset,
 feature_type = "external_gene_name")

cell_type_go = getCellTypeGO(go_seurat_obj = go_seurat_obj, cell_type_co = "cell_type_annotation")

corr_matrix = cellTypeGOCorr(cell_type_go = cell_type_go, corr_method = "pearson")

plotCellTypeCorrHeatmap(corr_matrix = corr_matrix, scale = "column")