safetyGraphicsApp {safetyGraphics}

Run the core safetyGraphics App

Description

Run the core safetyGraphics App

Usage

safetyGraphicsApp(
  domainData = list(labs = safetyData::adam_adlbc, aes = safetyData::adam_adae, dm =
    safetyData::adam_adsl),
  meta = NULL,
  charts = NULL,
  mapping = NULL,
  autoMapping = TRUE,
  filterDomain = "dm",
  chartSettingsPaths = NULL,
  runNow = TRUE
)

Arguments

domainData

named list of data.frames to be loaded in to the app. Sample AdAM data from the safetyData package used by default

meta

data frame containing the metadata for use in the app. If no metadata is provided, metatdata is generated by makeMeta().

charts

list of charts in the format produced by safetyGraphics::makeChartConfig()

mapping

list specifying the initial mapping values for each data mapping for each domain (e.g. list(aes= list(id_col='USUBJID', seq_col='AESEQ')).

autoMapping

boolean indicating whether the app should attempt to automatically detect data standards and generate mappings for the data provided. Values specified in the mapping parameter overwrite automatically generated mappings when both are found. Defaults to true.

filterDomain

domain used for the data/filter tab. Demographics ("dm") is used by default. Using a domain that is not one record per participant is not recommended.

chartSettingsPaths

path(s) where customization functions are saved relative to your working directory. All charts can have initialization (e.g. myChart_Init.R) and static charts can have charting functions (e.g. myGraphic_Chart.R). All R files in this folder are sourced and files with the correct naming convention are linked to the chart. See the Custom Charts vignette for more details.

runNow

Should the shiny app object created be run directly? Helpful when writing functions to dispatch to shinyapps, rsconnect, or shinyproxy.