trecase.X.out {rxSeq}

Example of results produced by optimizing step using process function on X chromosome genes. Structured as a list.

Description

A list containing test results as well as parameter estimates for joint model evaluated by process function for autosomal genes.

Value

a list of following matrices (if there is only one sex, only the relevant tests and matrices are outputed) :

pvals

matrix of p-values from description for each gene corresponding row

coef.full

matrix of full model fit coefficients, -log(likelihood at these coefficients),phi, theta (2 overdispersion parameters used)

coef.add

matrix of additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.poo

matrix of parent of origin restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.dom

matrix of dominance restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.same

matrix of TReC=ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.ase.add

matrix of ASE additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.sex

matrix of sex restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.sex.add

matrix of sex specific additive restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

coef.dev.dom

matrix of dominance deviation for male restricted fit coefficients, -log(likelihood at these coefficients),phi, theta

errorlist

a list of errors

hess.lst

a list of heassian matrices, if parameter hessian is set to TRUE

Author(s)

Vasyl Zhabotynsky [e-mail]

See Also

process, rcX, data.X.

Examples

names(trecase.X.out)