pbmcPlot {rliger} | R Documentation |
liger object of PBMC subsample data with plotting information available
Description
This data was generated from data "pbmc"
with default
parameter integration pipeline: normalize, selectGenes, scaleNotCenter,
runINMF, runCluster, runUMAP. To minimize the object size distributed with
the package, rawData and scaleData were removed. Genes are downsampled to
the top 50 variable genes, for smaller normData and matrix.
Usage
pbmcPlot
Format
liger object with two datasets named by "ctrl" and "stim".
Source
https://www.nature.com/articles/nbt.4042
References
Hyun Min Kang and et. al., Nature Biotechnology, 2018
[Package rliger version 2.0.1 Index]