entrez_citmatch {rentrez} | R Documentation |
Fetch pubmed ids matching specially formatted citation strings
Description
Fetch pubmed ids matching specially formatted citation strings
Usage
entrez_citmatch(bdata, db = "pubmed", retmode = "xml", config = NULL)
Arguments
bdata |
character, containing citation data. Each citation must be represented in a pipe-delimited format journal_title|year|volume|first_page|author_name|your_key| The final field "your_key" is arbitrary, and can used as you see fit. Fields can be left empty, but be sure to keep 6 pipes. |
db |
character, the database to search. Defaults to pubmed, the only database currently available |
retmode |
character, file format to retrieve. Defaults to xml, as per the API documentation, though note the API only returns plain text |
config |
vector configuration options passed to httr::GET |
Value
A character vector containing PMIDs
See Also
config
for available configs
Examples
## Not run:
ex_cites <- c("proc natl acad sci u s a|1991|88|3248|mann bj|test1|",
"science|1987|235|182|palmenberg ac|test2|")
entrez_citmatch(ex_cites)
## End(Not run)
[Package rentrez version 1.2.3 Index]