calcFStats {relSim} | R Documentation |
Calculate locus-wise and population \theta = F_{ST}
, F = F_{IT}
, and f = F_{IS}
values
Description
This procedure uses the method of Weir and Cockerham to estimate
\theta = F_{ST}
, F = F_{IT}
, and f = F_{IS}
for a population with known substructure
Usage
calcFStats(Pop, subPopIdx = NULL)
Arguments
Pop |
An object type 'population' |
subPopIdx |
If this vector is not null, then it must consist of
|
Value
A vector of length n_{loci}+1
with locus-wise
\theta
values and an overall \theta
value for the
population
Author(s)
James M. Curran
References
Weir, B.S., Genetic Data Analysis II, (1996) p.173–179, Sinauer, Sunderland, MA.
See Also
breedFst
Examples
data(USCaucs)
set.seed(123)
p = breedFst(USCaucs)
fstats = calcFStats(p)
fstats
[Package relSim version 1.0.0 Index]