refseq_fromGene {refseqR} | R Documentation |
Get the mRNA or protein accession
Description
refseq_fromGene()
Returns the mRNA or protein accession from a single GeneID.
Usage
refseq_fromGene(GeneID,sequence, retries)
Arguments
GeneID |
A character string of the GeneID. |
sequence |
A character string of the mRNA or protein accession to fetch data from mRNA or protein databases, respectively. |
retries |
A numeric value to control the number of retry attempts to handle 502 errors. |
Value
A character vector containing the mRNA or protein accession corresponding to the especified GeneID
.
Author(s)
Jose V. Die
See Also
refseq_protein2mRNA
to obtain the transcript accessions that encode a set of protein accessions.
refseq_mRNA2protein
to obtain the protein accessions encoded by a set of transcript accessions.
Examples
# Get the transcript accessions from a set of gene ids
locs <- c("LOC101512347")
sapply(locs, function(x) refseq_fromGene (x,sequence="transcript",retries=4),USE.NAMES=FALSE)
# Get the protein accessions from a set of gene ids
locs <- c("LOC101512347")
sapply(locs, function(x) refseq_fromGene (x,sequence="protein",retries=4),USE.NAMES=FALSE)
[Package refseqR version 1.1.2 Index]