refdb_check_tax_conflict {refdb} | R Documentation |
Check for conflicts in taxonomy
Description
Check for conflicts in taxonomy
Usage
refdb_check_tax_conflict(x)
Arguments
x |
a reference database. |
Value
A list of two-columns tibbles reporting for each taxonomic level the taxa with identical names but different upstream taxonomy.
Examples
lib <- read.csv(system.file("extdata", "ephem.csv", package = "refdb"))
lib <- refdb_set_fields(lib,
taxonomy = c(family = "family_name",
genus = "genus_name",
species = "species_name"),
sequence = "DNA_seq",
marker = "marker")
refdb_check_tax_conflict(lib)
[Package refdb version 0.1.1 Index]