| recluster.plot.col {recluster} | R Documentation |
Plotting data in RGB space
Description
This function plots a matrix obtained by recluster.col in the RGB space.
Usage
recluster.plot.col(mat,cext=0.3,cex=1,cex.axis=0.7,cex.lab=0.8,pch=16,text=TRUE,
add=F,xlim=NULL,ylim=NULL,ylab="Axis 2",xlab="Axis 1",...)
Arguments
mat |
A matrix inherited by recluster.col. |
cext |
Dimension for labels of row names. |
cex |
Dimension of dots. |
cex.axis |
Dimension of axis labels. |
cex.lab |
Dimension of labels. |
text |
A logical indicating if row names should be plotted. |
pch |
The shape of the dots (See par()). |
add |
A logical indicating if the plot should be added to a precedent graph. |
xlim |
The limit values for x-axis, if NULL the values in the orignal matrix is used. |
ylim |
The limit values for y-axis, if NULL the values in the orignal matrix is used. |
ylab |
The label of the y-axis |
xlab |
The label of the x-axis |
... |
See par() for other graphical parameters |
Value
A colour plot.
Author(s)
Leonardo Dapporto and Matteo Ramazzotti
References
Kreft H., Jetz, W. 2010. "A framework for delineating biogeographic regions based on species distributions" J Biogeogr (2010),37: 2029-2053.
Dapporto, L., Fattorini, S., Voda, R., Dinca, V., Vila, R. "Biogeography of western Mediterranean butterflies: combining turnover and nestedness components of faunal dissimilarity." J Biogeogr (2014), 41: 1639-1650.
Examples
data(datamod)
sordiss<- recluster.dist(datamod,dist="sorensen")
points<-cmdscale(sordiss)
col<-recluster.col(points)
recluster.plot.col(col)