| read.uc {rKOMICS} | R Documentation |
Read in uc files
Description
The read.uc function is used to read the output of clustering analyses from a UC file. The function stores the information in two tables: one for hit records (H) and one for cluster records (C).
Usage
read.uc(file)
Arguments
file |
the name of the UC file that contains the clustering analysis results. The file should be specified with its full name, including the extension (e.g., all.minicircles.circ.id70.uc). |
Value
hits |
a table containing all the hit records from the UC file. Each row of the table represents a hit record, providing information about the alignment between a query sequence and a target sequence. |
clusters |
a table containing all the cluster records from the UC file. Each row of the table represents a cluster record, providing information about the clustering of sequences into clusters. |
clustnumbers |
a vector containing the cluster numbers (0-based). Each element of the vector represents a cluster identified in the clustering analysis. |