ENAset {rENA}R Documentation

ENAset R6class

Description

ENAset R6class

ENAset R6class

Public fields

enadata

An ENAdata object originally used to create the set

points.raw

A data frame containing accumulated adjacency (co-occurrence) vectors per unit

points.normed.centered

A data frame of centered normed accumulated adjacency (co-occurrence) vectors for each unit

points.rotated

A data frame of point positions for number of dimensions specified in ena.make.set (i.e., the centered, normed, and rotated data)

line.weights

A data frame of connections strengths per unit (Data frame of normed accumu- lated adjacency (co-occurrence) vectors for each unit)

node.positions

- A data frame of positions for each code

codes

- A vector of code names

rotation.set

- An ENARotationSet object

variance

- A vector of variance accounted for by each dimension specified

centroids

- A matrix of the calculated centroid positions

function.call

- The string representation of function called

function.params

- A list of all parameters sent to function call

rotation_dists

TBD

points.rotated.scaled

TBD

points.rotated.non.zero

TBD

line.weights.unrotated

TBD

line.weights.non.zero

TBD

correlations

A data frame of spearman and pearson correlations for each dimension specified

center.align.to.origin

- align point and centroid centers to origin Create ENAset

Methods

Public methods

Method new()

Usage
ENAset$new(
  enadata,
  dimensions = 2,
  norm.by = fun_sphere_norm,
  rotation.by = ena.svd.R6,
  rotation.params = NULL,
  rotation.set = NULL,
  node.position.method = lws.positions.sq.R6,
  endpoints.only = TRUE,
  center.align.to.origin = TRUE,
  ...
)
Arguments
enadata

TBD

dimensions

TBD

norm.by

TBD

rotation.by

TBD

rotation.params

TBD

rotation.set

TBD

node.position.method

TBD

endpoints.only

TBD

center.align.to.origin

TBD

...

TBD

Returns

ENAset Process ENAset

Method process()

Usage
ENAset$process()
Returns

ENASet Get property from object

Method get()

Usage
ENAset$get(x = "enadata")
Arguments
x

character key to retrieve from object

Returns

value from object at x

Method clone()

The objects of this class are cloneable with this method.

Usage
ENAset$clone(deep = FALSE)
Arguments
deep

Whether to make a deep clone.

[Package rENA version 0.2.7 Index]