alleleINF {rCNV} | R Documentation |
Allele info example data
Description
Semi-randomly generated data from the function dup.snp.info. Data contains depth and proportion values of 2857 snps
Usage
data(alleleINF)
Format
An object of class data.frame
with 2857 rows and 28 columns.
Source
Chinook Salmon sequence reads McKinney et al. 2017
References
Larson, W. A., Seeb, L. W., Everett, M. V., Waples, R. K., Templin, W. D., & Seeb, J. E. (2014). Genotyping by sequencing resolves #' shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7(3)
McKinney, G. J., Waples, R. K., Seeb, L. W., & Seeb, J. E. (2017). Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping by sequencing data from natural populations. Molecular Ecology Resources, 17(4)
Examples
data(alleleINF)
with(alleleINF,plot(medRatio~propHet))
[Package rCNV version 1.2.0 Index]