ub.scan {ptm} | R Documentation |
Scan a Protein in Search of Ubiquitination Sites
Description
Scans the indicated protein in search of ubiquitination sites.
Usage
ub.scan(up_id, db = 'all')
Arguments
up_id |
a character string corresponding to the UniProt ID. |
db |
the database where to search. It should be one among 'PSP', 'dbPTM', 'all'. |
Details
If db = 'all' has been selected, it may happen that the same residue appears in several rows if it is present in different databases.
Value
Returns a dataframe where each row corresponds to a modifiable residue.
Author(s)
Juan Carlos Aledo
References
Hornbeck et al. Nucleic Acids Res. 2019 47:D433-D441, (PMID: 30445427).
Huang et al. Nucleic Acids Res. 2019 47:D298-D308, (PMID: 30418626).
See Also
meto.scan(), ac.scan(), me.scan(), p.scan(), su.scan(), gl.scan(), sni.scan(), ni.scan(), ptm.scan(), reg.scan(), dis.scan()
Examples
## Not run: ub.scan('Q16695', db = 'PSP')
[Package ptm version 0.2.7 Index]