res.dpx {ptm} | R Documentation |
Residue Depth Analysis
Description
Computes the depth from the surface for each protein's residue.
Usage
res.dpx(pdb, aa = 'all')
Arguments
pdb |
is either a PDB id, or the path to a pdb file. |
aa |
one letter code for the amino acid of interest, or 'all' for all the protein residues. |
Details
This function computes the depth, defined as the distance in angstroms between the residue and the closest atom on the protein surface.
Value
A dataframe with the computed depths.
Author(s)
Juan Carlos Aledo
References
Pintar et al. 2003. Bioinformatics 19:313-314 (PMID: 12538266)
See Also
atom.dpx(), acc.dssp(), str.part()
Examples
## Not run: res.dpx('1cll')
[Package ptm version 0.2.7 Index]