dpx {ptm}

Atom Depth Analysis

Description

Computes the depth from the surface for each protein's atom.

Usage

dpx(pdb)

Arguments

pdb

is either a PDB id, or the path to a pdb file.

Details

This function computes the depth, defined as the distance in angstroms between the target atom and the closest atom on the protein surface.

Value

A dataframe with the computed depths.

Author(s)

Juan Carlos Aledo

References

Pintar et al. 2003. Bioinformatics 19:313-314 (PMID: 12538266)

See Also

compute.dssp(), atom.dpx(), res.dpx(), acc.dssp(), str.part()

Examples

## Not run: dpx('3cwm')