readPeptideFasta {prozor}

wrapper setting the correct parameters seqinr::read.fasta for reading peptide sequences

Description

peptides which do not have protein assignment drop out

Usage

readPeptideFasta(file)

Arguments

file

- fasta file

Value

list with sequences

Examples

library(seqinr)

file = system.file("extdata/fgcz_contaminants2021_20210929.fasta.gz",package = "prozor")
fasta = readPeptideFasta(file)