| compute_F4DfromF2samples {poolfstat} | R Documentation |
compute_F4DfromF2samples
Description
Compute all F4 and Dstat from F2 values obtained from each block-jackknife bloc
Usage
.compute_F4DfromF2samples(blockF2, blockDenom, npops, verbose)
Arguments
blockF2 |
Numeric Matrix with nF2=(npop*(npop-1))/2 rows and nblocks columns matrix containing pairwise-pop F2 estimates for each block-jackknife sample (l.o.o.) |
blockDenom |
Numeric Matrix with nF4=(npops*(npops-1)/2)*((npops-2)*(npops-3)/2)/2 rows and nblocks containing the estimates of the denominator of Dstat (see compute_blockDdenom) for each block-jackknife sample (l.o.o.) |
npops |
Integer giving the number of populations |
verbose |
Logical (if TRUE progression bar is printed on the terminal) |
Details
Compute F4 and D estimates and their s.e. based on block-jackknife estimates of all F2 (and heterozygosities)
Value
Return a matrix with nF4=(npops*(npops-1)/2)*((npops-2)*(npops-3)/2)/2 rows and four columns corresponding to the mean and the s.e. of F4 and the mean and s.e. of Dstat
Examples
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