summary.cvFilt {pmartR} | R Documentation |
Coefficient of Variation (CV) Filter Summary
Description
Provide summary of a cvFilt S3 object
Usage
## S3 method for class 'cvFilt'
summary(object, cv_threshold = NULL, ...)
Arguments
object |
S3 object of class 'cvFilt' created by
|
cv_threshold |
numeric value greater than 1 and less than the value given by filter_object$CV. CV values above cv_threshold are filtered out. Default value is NULL. |
... |
further arguments passed to or from other methods |
Value
a summary of the CV values, number of NA values, and non-NA values. If a CV threshold is provided, the biomolecules that would be filtered based on this threshold are reported.
Author(s)
Lisa Bramer
See Also
Examples
library(pmartRdata)
mypep <- group_designation(omicsData = pep_object, main_effects = "Phenotype")
to_filter <- cv_filter(omicsData = mypep, use_groups = TRUE)
summary(to_filter, cv_threshold = 30)
[Package pmartR version 2.4.5 Index]