pmartR_filter_worker {pmartR}

Remove items that need to be filtered out

Description

This function removes rows and columns in e_data, f_data, and e_meta based on either remove or keep criteria.

Usage

pmartR_filter_worker(filter_object, omicsData)

Arguments

filter_object

A list of three elements. Each element contains a set of names to either remove or keep from e_data, f_data, and e_meta.

omicsData

an object of the class pepData, proData, lipidData, or metabData, usually created by as.pepData, as.proData, as.lipidData, or as.metabData, respectively.

Value

A list with three elements: first is the filtered e_data object, second is the filtered f_data object, and third is the filtered e_meta object.

Author(s)

Kelly Stratton, Lisa Bramer