plot.SPANSRes {pmartR} | R Documentation |
Plot SPANSRes Object
Description
For plotting an S3 object of type 'SPANSRes'
Usage
## S3 method for class 'SPANSRes'
plot(
x,
interactive = FALSE,
x_lab = NULL,
y_lab = NULL,
x_lab_size = 11,
y_lab_size = 11,
x_lab_angle = NULL,
title_lab = NULL,
title_lab_size = 14,
legend_lab = NULL,
legend_position = "right",
color_low = NULL,
color_high = NULL,
bw_theme = TRUE,
...
)
Arguments
x |
an object of the class 'SPANSRes', created by
|
interactive |
logical value. If TRUE produces an interactive plot. |
x_lab |
character string specifying the x-axis label. |
y_lab |
character string specifying the y-axis label. |
x_lab_size |
integer value indicating the font size for the x-axis. The default is 11. |
y_lab_size |
integer value indicating the font size for the y-axis. The default is 11. |
x_lab_angle |
integer value indicating the angle of x-axis labels. The default is NULL. |
title_lab |
character string specifying the plot title |
title_lab_size |
integer value indicating the font size of the plot title. The default is 14. |
legend_lab |
character string specifying the legend title |
legend_position |
character string specifying the position of the legend. Can be one of "right", "left", "top", "bottom", or "none". The default is "none". |
color_low |
character string specifying the color of the gradient for low values. |
color_high |
character string specifying the color of the gradient for high values |
bw_theme |
logical value. If TRUE uses the ggplot2 black and white theme. |
... |
further arguments passed to or from other methods. |
Value
ggplot2 plot object if interactive is FALSE, or plotly plot object if interactive is TRUE
Examples
library(pmartRdata)
data(pep_object)
mypep <- edata_transform(omicsData = pep_object, data_scale = "log2")
mypep <- group_designation(omicsData = mypep, main_effects = "Phenotype")
myspans <- spans_procedure(omicsData = mypep)
plot(myspans)