get_filters {pmartR}

Fetch the filters attribute

Description

Retrieves the values in the filters attribute from an omicsData object.

Usage

get_filters(omicsData)

Arguments

omicsData

An object of class pepData, proData, metabData, lipidData, or nmrData.

Value

A list containing filter class objects. Each element in this list corresponds to a filter applied to the data. The filters will be listed in the order they were applied. A filter object contains two elements:

• threshold – The threshold used to filter e_data. This value depends on the type of filter applied.

• filtered – A vector containing the identifiers from the edata_cname column that will be filtered.

• method – A character string indicating the type of method used to filter. This only applies when imdanova_filter is used.