all_subset {pmartR}

Identify All Biomolecules for Use in Normalization

Description

Selects biomolecules for normalization via choosing all biomolecules currently in the data

Usage

all_subset(e_data, edata_id)

Arguments

e_data

a p \times n + 1 data.frame, where p is the number of peptides, proteins, lipids, or metabolites and n is the number of samples. Each row corresponds to data for a peptide, protein, lipid, or metabolite, with one column giving the biomolecule identifier name.

edata_id

character string indicating the name of the peptide, protein, lipid, or metabolite identifier. Usually obtained by calling attr(omicsData, "cnames")$edata_cname.

Details

This function returns the subset of all biomolecules. These will be used for normalization.

Value

Character vector containing all biomolecules.

Author(s)

Kelly Stratton