Steepest_Desc {phytoclass}

Stand-alone version of steepest descent algorithm. This is similar to the CHEMTAX steepest descent algorithm. It is not required to use this function, and as results are not bound by minimum and maximum, results may be unrealistic.

Description

Stand-alone version of steepest descent algorithm. This is similar to the CHEMTAX steepest descent algorithm. It is not required to use this function, and as results are not bound by minimum and maximum, results may be unrealistic.

Usage

Steepest_Desc(Fmat, S, num.loops)

Arguments

Fmat

Pigment to Chl a matrix

S

Sample data matrix – a matrix of pigment samples

num.loops

Number of loops/iterations to perform (no default)

Value

A list containing

1. The F matrix (pigment: Chl a) ratios

2. RMSE (Root Mean Square Error)

3. Condition number

4. class abundances

5. Figure (plot of results)

6. MAE (Mean Absolute Error)

Examples

MC <- Matrix_checks(Sm,Fm)
Snew <- MC$Snew
Fnew <- MC$Fnew
SDRes <- Steepest_Desc(Fnew,Snew, num.loops = 20)