pglmm_profile_LRT {phyr}

pglmm_profile_LRT tests statistical significance of the phylogenetic random effect of binomial models on species slopes using a likelihood ratio test.

Description

pglmm_profile_LRT tests statistical significance of the phylogenetic random effect of binomial models on species slopes using a likelihood ratio test.

Usage

pglmm_profile_LRT(x, re.number = 0, cpp = TRUE)

communityPGLMM.profile.LRT(x, re.number = 0, cpp = TRUE)

Arguments

x

A fitted model with class communityPGLMM and family "binomial".

re.number

Which random term to test? Can be a vector with length >1

cpp

Whether to use C++ function for optim. Default is TRUE. Ignored if bayes = TRUE.

Value

A list of likelihood, df, and p-value.