get.phylip.name {phylotools} | R Documentation |
get the names of sequences from a PHYLIP file
Description
get the names of sequences from a PHYLIP file.
Usage
get.phylip.name(infile, clean_name = FALSE)
Arguments
infile |
character representing the name or path of the phylip file. |
clean_name |
logical, representing cleaning of the names will be performed. |
Details
Punctuation characters and white space be replaced by "_". Definition of Punctuation characters can be found at regex
.
Value
a character vector of the names of the sequences
Author(s)
Jinlong Zhang <jinlongzhang01@gmail.com>
See Also
Examples
cat("6 22",
"seq_1 --TTACAAATTGACTTATTATA",
"seq_2 GATTACAAATTGACTTATTATA",
"seq_3 GATTACAAATTGACTTATTATA",
"seq_5 GATTACAAATTGACTTATTATA",
"seq_8 GATTACAAATTGACTTATTATA",
"seq_10 ---TACAAATTGAATTATTATA",
file = "matk.phy", sep = "\n")
get.phylip.name("matk.phy")
unlink("matk.phy")
[Package phylotools version 0.2.2 Index]