phyloseqGraphTest-package {phyloseqGraphTest}

phyloseqGraphTest: Non-parametric graph-based testing for microbiome data.

Description

This package lets you test for differences between groups of samples with a graph-based permutation test.

Details

The main function in the package is graph_perm_test, which takes a phyloseq object.

The graph used in the test can be visualized using plot_test_network. The permutation distribution and the test statistic can be visualized with plot_permutations.