guidetree {phylolm}

Binary population tree within Arabidopsis thaliana

Description

Binary population tree for 29 A. thaliana accessions and A. lyrata, obtained from chromosome 4 using MDL to delimit loci, BUCKy to estimate quartet concordance factors (CFs) and Quartet Max Cut to estimate the tree topology.

Usage

data(guidetree)

Format

tree object of class phylo. Branch lengths are in coalescent units.

References

Stenz, Noah W. M., Bret Larget, David A. Baum and Cécile Ané (2015). Exploring tree-like and non-tree-like patterns using genome sequences: An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology, 64(5):809-823.

TICR pipeline: github.com/nstenz/TICR