preCalcWeights {phers} | R Documentation |
Pre-calculated weights for calculating phenotype risk scores
Description
The weights are based on EHR data from the Vanderbilt University Medical Center Synthetic Derivative (SD) and ICD-phecode map version 1.2 and are calculated using the "prevalence" method.
Usage
preCalcWeights
Format
A data.table with the following columns:
-
phecode
: Character vector of phecodes -
prev
: Numeric vector of prevalences, i.e., fraction of subjects in the SD that have at least one occurrence of the given phecode -
w
: Numeric vector of weights, calculated as-log10(prev)
See Also
[Package phers version 1.0.2 Index]