| sleepStages {phase} | R Documentation |
Plot sleep stages in individual flies
Description
Allows users to generate individual plots of sleep stages in flies. Sleep stages are defined as follows: 5 to 30-min as short sleep (light blue), 30 to 60-min as intermediate sleep (medium blue) and 60 to 720-min as deep sleep (dark blue). Activity is plotted in red. The input for this function must be the output of the trimData() function. The output of this function is a plot. Note: At this moment, this works accurately only for 24-h days.
Usage
sleepStages(data, n.days, channel = 1, photoperiod = 12)
Arguments
data |
Input data file. The input for this function must be the output of the function trimData(). See ??trimData(). |
n.days |
The number of cycles for which sleep stages must be visualized. |
channel |
The channel number of the fly to be visualized. |
photoperiod |
This value determines the duration of photo-phase and scoto-phase of the 24-h day. Defaults to 12. |
Value
A plot with the day-time and night-time sleep stages of a user defined fly for the number of cycles provided by the user.
Examples
## Not run:
td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 2, bin = 1, t.cycle = 24)
sleepStages(data = td, n.days = 1)
## End(Not run)