linkres {paramlink} | R Documentation |
S3 methods for class 'linkres'.
Description
Functions for printing, summarizing and plotting the results of a linkage analysis.
Usage
## S3 method for class 'linkres'
print(x, ...)
## S3 method for class 'linkres'
summary(object, ...)
## S3 method for class 'linkres'
as.data.frame(x, ..., sort = TRUE)
peakSummary(x, threshold, width = 1, physmap = NULL)
## S3 method for class 'linkres'
plot(x, chrom = NULL, ylim = NULL, ...)
Arguments
x , object |
|
... |
further arguments. |
sort |
a logical, indicating if the data frame should be sorted according to map position. |
threshold |
a single numeric. A peak is defined as a regions of at least
|
width |
a single numeric. |
physmap |
a matrix or data frame with three columns: Marker name, chromosome and physical position. This argument is optional. |
chrom |
NULL, or a numeric containing chromosome numbers. In the latter case only results for the markers on the indicated chromosomes will be plotted. |
ylim |
NULL, or a numeric of length 2: to be passed on to plot.default. |
See Also
Examples
x = linkdat(toyped, model=1)
lods = lod(x, theta='max')
summary(lods)
as.data.frame(lods)
[Package paramlink version 1.1-5 Index]