| plot_cvpred_mbplsda {packMBPLSDA} | R Documentation |
Plot the results of the fonction cvpred_mbplsda in a pdf file
Description
Fonction to draw the results of the fonction cvpred_mbplsda (2-fold cross-validated predictions) in a pdf file
Usage
plot_cvpred_mbplsda(obj, filename = "PlotCVpredMbplsda")
Arguments
obj |
object type list containing the results of the fonction cvpred_mbplsda |
filename |
a string of characters indicating the given pdf filename |
Details
no details are needed
Value
no numeric result
Author(s)
Marion Brandolini-Bunlon (<marion.brandolini-bunlon@inra.fr>) and Stephanie Bougeard (<stephanie.bougeard@anses.fr>)
References
Stone, M. (1974). Cross-validatory choice and assessment of statistical predictions. Journal of the Royal Statistical Society B, 36(2), 111-147.
Brandolini-Bunlon, M., Petera, M., Gaudreau, P., Comte, B., Bougeard, S., Pujos-Guillot, E.(2019). A new tool for multi-block PLS discriminant analysis of metabolomic data: application to systems epidemiology. Presented at 12emes Journees Scientifiques RFMF, Clermont-Ferrand, FRA(05-21-2019 - 05-23-2019).
Brandolini-Bunlon, M., Petera, M., Gaudreau, P., Comte, B., Bougeard, S., Pujos-Guillot, E.(2019). Multi-block PLS discriminant analysis for the joint analysis of metabolomic and epidemiological data. Metabolomics, 15(10):134
Brandolini-Bunlon, M., Petera, M., Gaudreau, P., Comte, B., Bougeard, S., Pujos-Guillot, E.(2020). A new tool for multi-block PLS discriminant analysis of metabolomic data: application to systems epidemiology. Presented at Chimiometrie 2020, Liege, BEL(01-27-2020 - 01-29-2020).
See Also
mbplsda
cvpred_mbplsda
packMBPLSDA-package
Examples
data(status)
data(medical)
data(omics)
data(nutrition)
ktabX <- ktab.list.df(list(medical = medical[,1:10],
nutrition = nutrition[,1:10], omics = omics[,1:20]))
disjonctif <- (disjunctive(status))
dudiY <- dudi.pca(disjonctif , center = FALSE, scale = FALSE, scannf = FALSE)
bloYobs <- 2
ncpopt <- 1
modelembplsQ <- mbplsda(dudiY, ktabX, scale = TRUE, option = "uniform",
scannf = FALSE, nf = 2)
CVpred <- cvpred_mbplsda(modelembplsQ, nrepet = 30, threshold = 0.5, bloY=bloYobs,
optdim=ncpopt, cpus = 1, algo = c("max"))
plot_cvpred_mbplsda(CVpred,"plotCVPred_nf1_30rep")
data(status)
data(medical)
data(omics)
data(nutrition)
ktabX <- ktab.list.df(list(medical = medical,
nutrition = nutrition, omics = omics))
disjonctif <- (disjunctive(status))
dudiY <- dudi.pca(disjonctif , center = FALSE, scale = FALSE, scannf = FALSE)
bloYobs <- 2
ncpopt <- 1
modelembplsQ <- mbplsda(dudiY, ktabX, scale = TRUE, option = "uniform",
scannf = FALSE, nf = 2)
CVpred <- cvpred_mbplsda(modelembplsQ, nrepet = 90, threshold = 0.5, bloY=bloYobs,
optdim=ncpopt, cpus = 1, algo = c("max"))
plot_cvpred_mbplsda(CVpred,"plotCVPred_nf1_90rep")