list_cond_L {occumb}

Conditions for local assessment under certain budget and cost values.

Description

list_cond_L() constructs a list of possible local species diversity assessment conditions under the specified budget and cost values.

Usage

list_cond_L(budget, lambda1, lambda2, fit, K = NULL)

Arguments

budget

A numeric specifying budget amount. The currency unit is arbitrary but must be consistent with that of lambda1 and lambda2.

lambda1

A numeric specifying the cost per sequence read for high-throughput sequencing. The currency unit is arbitrary but must be consistent with that of budget and lambda2.

lambda2

A numeric specifying the cost per replicate for library preparation. The currency unit is arbitrary but must be consistent with that of budget and lambda1.

fit

An occumbFit object.

K

An optional vector for manually specifying the number of replicates.

Details

This function can generate a data frame object to be given to the settings argument of eval_util_L(); see Examples of eval_util_L(). By default, it outputs a list of all feasible combinations of values for the number of replicates per site K and the sequencing depth per replicate N based on the given budget, cost values, and number of sites (identified by reference to the fit object). The resulting N can be a non-integer because it is calculated simply by assuming that the maximum value can be obtained. To obtain a list for only a subset of the possible K values under a given budget and cost value, the K argument is used to provide a vector of the desired K values.

Value

A data frame containing columns named budget, lambda1, lambda2, K, and N.