autoplot.frfast {npregfast}

Visualization of frfast objects with ggplot2 graphics

Description

Useful for drawing the estimated regression function, first and second derivative (for each factor's level) using ggplot2 graphics. Additionally, with the diffwith argument it is possible to draw the differences between two factor's levels.

Usage

## S3 method for class 'frfast'
autoplot(
  object = model,
  fac = NULL,
  der = 0,
  diffwith = NULL,
  points = TRUE,
  xlab = model$name[2],
  ylab = model$name[1],
  ylim = NULL,
  main = NULL,
  col = "black",
  CIcol = "black",
  CIlinecol = "transparent",
  pcol = "grey80",
  abline = TRUE,
  ablinecol = "red",
  lty = 1,
  CIlty = 2,
  lwd = 1,
  CIlwd = 1,
  cex = 1.4,
  alpha = 0.2,
  ...
)

Arguments

object

frfast object.

fac

Factor's level to be taken into account in the plot. By default is NULL.

der

Number which determines any inference process. By default der is 0. If this term is 0, the plot shows the initial estimate. If it is 1 or 2, it is designed for the first or second derivative, respectively.

diffwith

Factor's level used for drawing the differences respect to the level specified in the fac argument. By default, NULL. The differences are computed for the r-th derivative specified in the der argument.

points

Draw the original data into the plot. By default it is TRUE.

xlab

A title for the x axis.

ylab

A title for the y axis.

ylim

The y limits of the plot.

main

An overall title for the plot.

col

A specification for the default plotting color.

CIcol

A specification for the default confidence intervals plotting color (for the fill).

CIlinecol

A specification for the default confidence intervals plotting color (for the edge).

pcol

A specification for the points color.

abline

Draw an horizontal line into the plot of the second derivative of the model.

ablinecol

The color to be used for abline.

lty

The line type. Line types can either be specified as an integer (0 = blank, 1 = solid (default), 2 = dashed, 3 = dotted, 4 = dotdash, 5 = longdash, 6 = twodash). See details in par.

CIlty

The line type for confidence intervals. Line types can either be specified as an integer (0 = blank, 1 = solid (default), 2 = dashed, 3 = dotted, 4 = dotdash, 5 = longdash, 6 = twodash).

lwd

The line width, a positive number, defaulting to 1. See details in par.

CIlwd

The line width for confidence intervals, a positive number, defaulting to 1.

cex

A numerical value giving the amount by which plotting symbols should be magnified relative to the default. See details in par.

alpha

Alpha transparency for overlapping elements expressed as a fraction between 0 (complete transparency) and 1 (complete opacity).

...

Other options.

Value

A ggplot object, so you can use common features from ggplot2 package to manipulate the plot.

Author(s)

Marta Sestelo, Nora M. Villanueva and Javier Roca-Pardinas.

Examples

library(npregfast)
library(ggplot2)


data(barnacle)

# Nonparametric regression without interactions
fit <- frfast(DW ~ RC, data = barnacle, nboot = 50) 
autoplot(fit)
autoplot(fit, points = FALSE) + ggtitle("Title")
autoplot(fit, der = 1) + xlim(4, 20)
#autoplot(fit, der = 1, col = "red", CIcol = "blue")

# Nonparametric regression with interactions
fit2 <- frfast(DW ~ RC : F, data = barnacle, nboot = 50) 
autoplot(fit2, fac = "barca")
# autoplot(fit2, der = 1, fac = "lens")

# Visualization of the differences between two factor's levels
autoplot(fit2, fac = "barca", diffwith = "lens")
# autoplot(fit2, der = 1, fac = "barca", diffwith = "lens")


#Plotting in the same graphics device
## Not run: 

if (requireNamespace("gridExtra", quietly = TRUE)) {

# For plotting two derivatives in the same graphic windows
ders <- lapply(0:1, function(x) autoplot(fit, der = x))
gridExtra::grid.arrange(grobs = ders, ncol = 2, nrow = 1)

# For plotting two levels in the same graphic windows
facs <- lapply(c("barca", "lens"), function(x) autoplot(fit2, der = 0, fac = x))
gridExtra::grid.arrange(grobs = facs, ncol = 2, nrow = 1)

}


## End(Not run)