ggplot_tnp {normfluodbf} | R Documentation |
Title: A Visualization function.
Description
A visualization function using ggplot2.
Usage
ggplot_tnp(df, x, y_list, xlim, ylim, xlab = NULL, ylab = NULL, title = NULL)
Arguments
df |
A clean data frame with attributes or tuples containing a mixture of samples. |
x |
The X-variable often the cycle number OR time. |
y_list |
A character vector of samples that need to be plotted. Often of the format TNP (Test, Negative, Positive). |
xlim |
The X-variable scale. |
ylim |
The Y-variable scale. |
xlab |
The X axis label. Takes a string. |
ylab |
The Y-axis label. Takes a string. |
title |
Graph title. Takes a string. |
Value
A nice visual of the clean and normalized data frame.
Author(s)
Tingwei Adeck
Examples
fpath <- system.file("extdata", "dat_1.dat", package = "normfluodbf", mustWork = TRUE)
dat_df <- normfluodat(fpath,3,40, rows_used = c('A','B','C'), norm_scale = 'one')
yvars <- c("A1","B1","C1")
xvar <- c("Cycle_Number", "Time")
xl <- c(0,40)
yl <- c(0,1)
ggplot_tnp(dat_df,xvar,yvars,xl,yl,xlab='Cycle_Number',ylab='Normalized Fluorescence',title='LFA')
[Package normfluodbf version 1.5.2 Index]