R: Fit a Latent Growth Curve Model with Time-invariant Covariate...

getLGCM {nlpsem}

R Documentation

Fit a Latent Growth Curve Model with Time-invariant Covariate (If Any)

Description

This function fits a latent growth curve model with or without time-invariant covariates to the provided data. It manages model setup, optimization, and if requested, outputs parameter estimates and standard errors.

Usage

getLGCM(
  dat,
  t_var,
  y_var,
  curveFun,
  intrinsic = TRUE,
  records,
  growth_TIC = NULL,
  starts = NULL,
  res_scale = NULL,
  tries = NULL,
  OKStatus = 0,
  jitterD = "runif",
  loc = 1,
  scale = 0.25,
  paramOut = FALSE,
  names = NULL
)

Arguments

`dat`	A wide-format data frame, with each row corresponding to a unique ID. It contains the observed variables with repeated measurements and occasions, and time-invariant covariates (TICs) if any.
`t_var`	A string specifying the prefix of the column names corresponding to the time variable at each study wave.
`y_var`	A string specifying the prefix of the column names corresponding to the outcome variable at each study wave.
`curveFun`	A string specifying the functional form of the growth curve. Supported options for latent growth curve models are: `"linear"` (or `"LIN"`), `"quadratic"` (or `"QUAD"`), `"negative exponential"` (or `"EXP"`), `"Jenss-Bayley"` (or `"JB"`), and `"bilinear spline"` (or `"BLS"`).
`intrinsic`	A logical flag indicating whether to build an intrinsically nonlinear longitudinal model. Default is `TRUE`.
`records`	A numeric vector specifying indices of the study waves.
`growth_TIC`	A string or character vector specifying the column name(s) of time-invariant covariate(s) contributing to the variability of growth factors if any. Default is `NULL`, indicating no growth TICs are included in the model.
`starts`	A list containing initial values for the parameters. Default is `NULL`, indicating no user-specified initial values.
`res_scale`	A numeric value representing the scaling factor for the initial calculation of the residual variance. This value should be between `0` and `1`, exclusive. By default, this is `NULL`, as it is unnecessary when the user specifies the initial values using the `starts` argument.
`tries`	An integer specifying the number of additional optimization attempts. Default is `NULL`.
`OKStatus`	An integer (vector) specifying acceptable status codes for convergence. Default is `0`.
`jitterD`	A string specifying the distribution for jitter. Supported values are: `"runif"` (uniform distribution), `"rnorm"` (normal distribution), and `"rcauchy"` (Cauchy distribution). Default is `"runif"`.
`loc`	A numeric value representing the location parameter of the jitter distribution. Default is `1`.
`scale`	A numeric value representing the scale parameter of the jitter distribution. Default is `0.25`.
`paramOut`	A logical flag indicating whether to output the parameter estimates and standard errors. Default is `FALSE`.
`names`	A character vector specifying parameter names. Default is `NULL`.

Value

An object of class myMxOutput. Depending on the paramOut argument, the object may contain the following slots:

mxOutput: This slot contains the fitted latent growth curve model. A summary of this model can be obtained using the ModelSummary() function.
Estimates (optional): If paramOut = TRUE, a data frame with parameter estimates and standard errors. The content of this slot can be printed using the printTable() method for S4 objects.

References

Liu, J., Perera, R. A., Kang, L., Kirkpatrick, R. M., & Sabo, R. T. (2021). "Obtaining Interpretable Parameters from Reparameterizing Longitudinal Models: Transformation Matrices between Growth Factors in Two Parameter Spaces". Journal of Educational and Behavioral Statistics. doi:10.3102/10769986211052009
Sterba, S. K. (2014). "Fitting Nonlinear Latent Growth Curve Models With Individually Varying Time Points". Structural Equation Modeling: A Multidisciplinary Journal, 21(4), 630-647. doi:10.1080/10705511.2014.919828

Examples

mxOption(model = NULL, key = "Default optimizer", "CSOLNP", reset = FALSE)
# Load ECLS-K (2011) data
data("RMS_dat")
RMS_dat0 <- RMS_dat
# Re-baseline the data so that the estimated initial status is for the starting point of the study
baseT <- RMS_dat0$T1
RMS_dat0$T1 <- RMS_dat0$T1 - baseT
RMS_dat0$T2 <- RMS_dat0$T2 - baseT
RMS_dat0$T3 <- RMS_dat0$T3 - baseT
RMS_dat0$T4 <- RMS_dat0$T4 - baseT
RMS_dat0$T5 <- RMS_dat0$T5 - baseT
RMS_dat0$T6 <- RMS_dat0$T6 - baseT
RMS_dat0$T7 <- RMS_dat0$T7 - baseT
RMS_dat0$T8 <- RMS_dat0$T8 - baseT
RMS_dat0$T9 <- RMS_dat0$T9 - baseT
# Standardized time-invariant covariates
RMS_dat0$ex1 <- scale(RMS_dat0$Approach_to_Learning)
RMS_dat0$ex2 <- scale(RMS_dat0$Attention_focus)


# Fit bilinear spline latent growth curve model (fixed knots)
BLS_LGCM_r <- getLGCM(
  dat = RMS_dat0, t_var = "T", y_var = "M", curveFun = "bilinear spline",
  intrinsic = FALSE, records = 1:9, growth_TIC = NULL, res_scale = 0.1
)
# Fit bilinear spline latent growth curve model (random knots) with
# time-invariant covariates for mathematics development
## Define parameter names
paraBLS.TIC_LGCM.f <- c(
  "alpha0", "alpha1", "alpha2", "alphag",
  paste0("psi", c("00", "01", "02", "0g", "11", "12", "1g", "22", "2g", "gg")),
  "residuals", paste0("beta1", c(0:2, "g")), paste0("beta2", c(0:2, "g")),
  paste0("mux", 1:2), paste0("phi", c("11", "12", "22")),
  "mueta0", "mueta1", "mueta2", "mu_knot"
)
## Fit the model
BLS_LGCM.TIC_f <- getLGCM(
  dat = RMS_dat0, t_var = "T", y_var = "M", curveFun = "bilinear spline",
  intrinsic = TRUE, records = 1:9, growth_TIC = c("ex1", "ex2"), res_scale = 0.1,
  paramOut = TRUE, names = paraBLS.TIC_LGCM.f
)
## Output point estimate and standard errors
printTable(BLS_LGCM.TIC_f)

[Package nlpsem version 0.3 Index]