read.neuron.fiji {nat}

Read a neuron saved by Fiji's Simple Neurite Tracer Plugin

Description

Read a neuron saved by Fiji's Simple Neurite Tracer Plugin

Usage

read.neuron.fiji(f, ..., simplify = TRUE, Verbose = FALSE)

Arguments

f

Path to a file

...

Additional arguments passed to xmlParse.

simplify

Whether to return a single neuron as a neuron object rather than a neuronlist of length 1.

Verbose

Whether to print status messages during parsing.

Details

This is an XML based format so parsing it depends on installation of the suggested XML package.

References

https://imagej.net/plugins/snt/ https://imagej.net/plugins/snt/extending