sub_score_mat {nat.nblast} | R Documentation |
Return scores (or distances) for given query and target neurons
Description
Scores can either be returned as raw numbers, normalised such that a self-hit
has score 1, or as the average of the normalised scores in both the forwards
& reverse directions (i.e. |query->target| + |target->query| / 2
).
Distances are returned as either 1 - normscore
in the forwards
direction, or as 1 - normscorebar
, where normscorebar
is
normscore
averaged across both directions.
Usage
sub_score_mat(
query,
target,
scoremat = NULL,
distance = FALSE,
normalisation = c("raw", "normalised", "mean")
)
Arguments
query , target |
character vectors of neuron identifiers. |
scoremat |
a matrix, ff matrix, |
distance |
logical indicating whether to return distances or scores. |
normalisation |
the type of normalisation procedure that should be
carried out, selected from |