fill_pairs_sparse_score_mat {nat.nblast}

Add forwards, reverse and self scores for a pair of neurons to a sparse score matrix

Description

Add forwards, reverse and self scores for a pair of neurons to a sparse score matrix

Usage

fill_pairs_sparse_score_mat(
  sparse_matrix,
  n1,
  n2,
  dense_matrix,
  reverse = TRUE,
  self = TRUE,
  reverse_self = (reverse && self)
)

Arguments

sparse_matrix

the sparse matrix to fill in.

n1

the name of the query neuron.

n2

the name of the target neuron.

dense_matrix

the score matrix from which to extract scores.

reverse

logical indicating that the reverse score should also be filled in (default TRUE).

self

logical indicating that the self-score of the query should also be filled in (used for normalised scores; default TRUE).

reverse_self

logical indicating that the self-score of the target should also be filled in (used for mean scores; default TRUE).

Value

A sparse matrix (of class spam) with the specified score entries filled.