mvMORPH-package {mvMORPH}

Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data

Description

Fit of multivariate evolutionary models on trees (with one or multiple selective regimes) and time-series dedicated to morphometrics or biometric continuous data with covariation. Testing for a phylogenetic signal in a multivariate dataset (including fossil and/or extant taxa), fitting linear models to high-dimensional multivariate comparative data, changes in rate or mode of evolution of continuous traits, simulating multivariate traits evolution, computing the likelihood of multivariate models, accounts for measurement errors and missing data, and other things...

Details

Package:	mvMORPH
Type:	Package
Version:	1.1.9
Date:	2013-07-22
License:	GPL (>=2.0)

Author(s)

Julien Clavel

Maintainer: Julien Clavel <[e-mail]>

References

Clavel et al. (2015). mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data. Methods in Ecology and Evolution, 6(11):1311-1319. doi: 10.1111/2041-210X.12420.

Clavel et al. (2019). A Penalized Likelihood framework for high-dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution. Systematic Biology 68(1): 93-116. doi: 10.1093/sysbio/syy045.

Clavel & Morlon (2020). Reliable phylogenetic regressions for multivariate comparative data: illustration with the MANOVA and application to the effect of diet on mandible morphology in Phyllostomid bats. Systematic Biology 69(5): 927-943. doi: 10.1093/sysbio/syaa010

See Also

mvols mvgls mvgls.pca mvgls.dfa manova.gls pairwise.glh mvOU mvBM mvEB mvSHIFT mvOUTS mvRWTS mvSIM mvLL LRT halflife stationary estim aicw GIC EIC mvqqplot