select_most_severe_consequence_pave {mutationtypes} | R Documentation |
Select the most severe consequence (PAVE)
Description
Take a character vector which may contain multiple PAVE mutation types separated by '&' And choose only the most severe consequence
Usage
select_most_severe_consequence_pave(
pave_mutation_types,
missing_is_valid = FALSE
)
Arguments
pave_mutation_types |
a character vector of PAVE terms, where multiple pave_mutation_types per field are & delimited, and you want to choose the most severe consequence . |
missing_is_valid |
should NA values be considered valid mutation classes or should they throw an error? (flag) |
Value
the most severe consequence for each element in pave_mutation_types
Examples
select_most_severe_consequence_pave(
c(
"upstream_gene_variant&phased_synonymous&5_prime_UTR_variant",
"missense_variant&frameshift_variant"
)
)
#> Result:
#> c("phased_synonymous", "frameshift_variant")
[Package mutationtypes version 0.0.1 Index]